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graph2tab, a library to convert experimental workflow graphs into tabular formats.

Titlegraph2tab, a library to convert experimental workflow graphs into tabular formats.
Publication TypeJournal Article
Year of Publication2012
AuthorsBrandizi, M., N. Kurbatova, U. Sarkans, and P. Rocca-Serra
JournalBioinformatics
Date Published2012 May 3
ISSN1367-4811
Abstract

Motivations: Spreadsheet-like tabular formats are ever more popular in the biomedical field as a mean for experimental reporting. The problem of converting the graph of an experimental workflow into a table-based representation occurs in many such formats and is not easy to solve.

Results: We describe graph2tab, a library that implements methods to realise such a conversion in a size-optimised way. Our solution is generic and can be adapted to specific cases of data exporters or data converters that need to be implemented.

Availability and Implementation: The library source code and documentation are available at http://github.com/ISA-tools/graph2tab.

Contact: brandizi@ebi.ac.uk.

Supplementary Information: A supplementary document describes the theoretical and technical details about the library implementation.

DOI10.1093/bioinformatics/bts258
Full Text
PubMed ID22556367
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